PostgreSQL optimization including indexes, query plans, partitioning, JSONB operations, and connection pooling
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PostgreSQL optimization including indexes, query plans, partitioning, JSONB operations, and connection pooling
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Use this skill for any PostgreSQL database work — table design, indexing, data types, constraints, extensions (pgvector, PostGIS, TimescaleDB), search, and migrations. **Trigger when user asks to:** - Explore an existing PostgreSQL database to understand its objects and relationships - Design or modify PostgreSQL tables, schemas, or data models - Choose data types, constraints, indexes, or partitioning strategies - Work with pgvector embeddings, semantic search, or RAG - Set up full-text search, hybrid search, or BM25 ranking - Use PostGIS for spatial/geographic data - Set up TimescaleDB hypertables for time-series data - Migrate tables to hypertables or evaluate migration candidates - Plan or execute safe schema migrations with zero downtime **Keywords:** PostgreSQL, Postgres, SQL, schema, table design, indexes, constraints, pgvector, PostGIS, TimescaleDB, hypertable, semantic search, hybrid search, BM25, time-series, migration
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Three.js scene-graph parsing and export workflows: mesh baking, InstancedMesh expansion, part partitioning, per-link OBJ export, and URDF articulation.
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Optimize workload distribution across workers, processes, or nodes for efficient parallel execution. Use when asked to balance work distribution, improve parallel efficiency, reduce stragglers, implement load balancing, or optimize task scheduling. Covers static/dynamic partitioning, work stealing, and adaptive load balancing strategies.
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Optimize Apache Spark jobs with partitioning, caching, shuffle optimization, and memory tuning. Use when improving Spark performance, debugging slow jobs, or scaling data processing pipelines.
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Expert database optimizer specializing in modern performance tuning, query optimization, and scalable architectures. Masters advanced indexing, N+1 resolution, multi-tier caching, partitioning strategies, and cloud database optimization. Handles complex query analysis, migration strategies, and performance monitoring. Use PROACTIVELY for database optimization, performance issues, or scalability challenges.
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Use when reviewing a DataFusion Comet pull request that touches native or JVM columnar shuffle, the shuffle writers and readers, partitioning, the Arrow IPC block format, shuffle compression, or the Celeborn integration. Load alongside review-comet-pr.
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Use when partitioning content between an Advanced Materials main text and its Supporting Information, ensuring the paper stands alone while extended data, full experimental detail, and secondary characterization live in the SI. Organizes the Supporting Information; does not write the main text.
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Quantifies biodiversity from species abundance/incidence tables using Hill numbers (iNEXT) with coverage-based rarefaction-extrapolation (Chao & Jost 2012), asymptotic richness via Chao1/ACE/jackknife as a lower bound, Baselga turnover/nestedness partition with the Podani alternative as sensitivity check, mandatory Hellinger transformation before ordination (Legendre & Gallagher 2001), Faith PD and SES_MPD/SES_MNTD with explicit null-model choice, and Maire 2015 functional-diversity dimensionality optimization. Use when comparing diversity across sites with unequal sampling effort, picking the right richness estimator for singleton-heavy amplicon data, partitioning beta diversity into turnover vs nestedness, reporting Hill-number effective species counts rather than raw entropies, computing SES_MPD with explicit null-model justification, or deciding whether to apply standard metrics to compositional amplicon data. Not for clinical 16S microbiome diversity (see microbiome/diversity-analysis).
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Set up and manage NVIDIA GPU servers for AI workloads — driver installation, CUDA toolkit, container toolkit, MIG partitioning, GPU health monitoring, and multi-GPU configuration for LLM inference and training.
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Operate GPU-backed Kubernetes clusters for AI inference and training with scheduling, autoscaling, node health, MIG partitioning, and cost controls.
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Optimizes database queries and improves performance across PostgreSQL and MySQL systems including index design, query rewrites, configuration tuning, and partitioning strategies.
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When designing distributed systems for scalability, reliability, and consistency. Covers CAP/PACELC theorems, consistency models (strong, eventual, causal), replication patterns (leader-follower, multi-leader, leaderless), partitioning strategies (hash, range, geographic), transaction patterns (saga, event sourcing, CQRS), resilience patterns (circuit breaker, bulkhead), service discovery, and caching strategies for building fault-tolerant distributed architectures.
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Compute the bacterial pan-genome from Prokka/Bakta GFF3 annotations with Roary's CD-HIT + BLAST + MCL clustering pipeline. Builds gene presence/absence matrices, core/soft-core/shell/cloud partitions, multi-FASTA core gene alignments (with `-e`), and a pan-genome reference. Use Panaroo for higher-accuracy pan-genomes from highly fragmented assemblies, PIRATE for paralog-aware clustering, or PPanGGOLiN for graph-based partitioning.
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Applies data-grid architecture for high-traffic stateful workloads. Use when a single database cannot scale and in-memory partitioning is needed.
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End-to-end post-GWAS causal inference pipeline orchestrating heritability partitioning, genetic correlation, Mendelian randomization with CHP-aware sensitivity (CAUSE / LHC-MR), colocalization, fine-mapping with SuSiE / FOCUS, mediation, TWAS triangulation, cis-pQTL drug-target MR, effector-gene prioritization (L2G / PoPS / cS2G), and GenomicSEM common-factor GWAS. Use when triangulating causal inference across multiple complementary methods, prioritizing tissues via stratified LDSC, nominating or de-risking drug targets, mapping a lead SNP to a candidate effector gene, modeling shared genetic architecture across correlated traits, or producing a STROBE-MR-compliant publication-grade evidence battery from GWAS summary statistics.
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Calculates species richness, diversity, and turnover using the Hill number framework with iNEXT coverage-based rarefaction/extrapolation, asymptotic diversity estimation, and beta diversity partitioning (betapart turnover vs nestedness). Compares assemblages using coverage-standardized rather than size-standardized rarefaction. Use when quantifying biodiversity from species abundance or incidence data, comparing diversity across sites, or constructing rarefaction curves. Not for clinical 16S microbiome alpha/beta diversity (see microbiome/diversity-analysis).
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Think and work like an expert Horticulturist. Use when a task calls for Horticulturist judgment. Reasons from plant-environment-cultural coupling, source-sink carbon partitioning, and chilling/photoperiod thresholds through rootstock-scion matching, DLI/VPD and substrate EC/pH targets, Dynamic/Utah chill models, and CA/MA postharvest setpoints while treating blossom-end rot, bitter pit, tipburn, storage scald, and MRL/PHI breaches as first-class failure modes.
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Think and work like an expert Geodynamics & Tectonics Scientist. Use when a task calls for Geodynamics & Tectonics Scientist judgment. Reasons from plate kinematics, lithospheric rheology, and interseismic-versus-coseismic strain partitioning through GAMIT/GLOBK and MintPy geodesy, Okada/viscoelastic slip inversion, OxCal paleoseismic chronologies, ASPECT mantle modeling, and OpenQuake/USGS NSHM hazard while treating InSAR atmospheric delay, monument instability, unmodeled postseismic afterslip, and incompatible-timescale rate stacking as first-class failure modes.
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Think and work like an expert Environmental Chemist. Use when a task calls for Environmental Chemist judgment. Reasons from thermodynamic partitioning (K_oc/K_ow, Henry's law), pathway-specific half-lives, and mass balance through GC-MS/LC-MS/MS/ICP-MS analysis, EPI Suite and fugacity fate models, and EPA SW-846 QA/QC while treating blank contamination, matrix suppression, censored sub-LOD data, and unscoped transformation products as first-class failure modes.
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Think and work like an expert Environmental Scientist. Use when a task calls for Environmental Scientist judgment. Reasons from source-pathway-receptor linkages, multimedia partitioning, and dose-as-exposure through conceptual site models, fate models (MODFLOW/MT3DMS, AERMOD), SW-846 QA/QC chains, and ProUCL/Mann-Kendall statistics while treating censoring bias, conceptual-model error, well-construction artifacts, and seasonal confounding as first-class failure modes.
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Think and work like an expert Crop Scientist. Use when a task calls for Crop Scientist judgment. Reasons from genotype-by-environment-by-management interaction, yield-component partitioning, and phenology-gated critical periods through MET stability analysis (AMMI, Finlay-Wilkinson, GGE biplots), mixed models (ASReml-R, lme4), N-response curves (quadratic-plateau, MRTN), and crop models (APSIM, DSSAT) while treating pseudo-replicated subsamples, single-site yield champions, uncorrected harvest moisture, and weather-during-anthesis confounding as first-class failure modes.
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Think and work like an expert Ecosystem Ecologist. Use when a task calls for Ecosystem Ecologist judgment. Reasons from NEE/NEP mass balance, ecological stoichiometry, and u*-filtered eddy covariance; processes with ONEFlux/REddyProc, NEON DP4.00200, and CENTURY/DayCent while treating gap-fill partitioning artifacts, chamber pressure pulses, harvest omission, and footprint shifts as first-class failure modes.
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Think and work like an expert Carbon Cycle Scientist. Use when a task calls for Carbon Cycle Scientist judgment. Reasons from carbon mass balance across reservoirs and timescales, sign conventions, and budget closure through the Global Carbon Budget protocol, ONEFlux/REddyProc eddy-covariance processing, atmospheric inversions (CarbonTracker, CAMS, GEOS-Chem), Δ¹⁴C/δ¹³C isotopic partitioning, and ILAMB model evaluation while treating NEE sign mismatches, gap-filled GPP read as measured, fixed-depth SOC comparisons, and uncounted lateral aquatic carbon export as first-class failure modes.
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