「cli」の検索結果

Align preprocessed CLIP-seq reads (eCLIP, iCLIP, iCLIP2, PAR-CLIP) to genome with STAR or bowtie2 using crosslink-preserving parameters, choosing between unique-mapper-only and multi-mapper-aware alignment for repeat-binding RBPs, deciding STAR vs HISAT2 memory trade-offs, and applying ENCODE-compatible filters. Use when turning preprocessed CLIP FASTQ into a deduplicated, MAPQ-filtered BAM ready for peak calling or crosslink-site detection.

日本語の概要は準備中です。原文の説明を表示しています。

Comprehensive quality control for CLIP-seq libraries (eCLIP, iCLIP, iCLIP2, PAR-CLIP) covering library complexity (preseq), FRiP, IDR replicate reproducibility, read-distribution metagene, SMInput vs IgG control rationale, rRNA / snoRNA contamination, fragment-length distribution, and ENCODE-compliance thresholds. Use when assessing whether a CLIP library passed, deciding lenient vs stringent peak thresholds, comparing replicates with IDR rescue and self-consistency ratios, or distinguishing failed IP from over-amplified library.

日本語の概要は準備中です。原文の説明を表示しています。

Create a ClickHouse materialization to stream Estuary collections into ClickHouse tables. Use when setting up ClickHouse as a destination for captured data. Use when user says "send to ClickHouse", "materialize to ClickHouse", "ClickHouse destination", or "load into ClickHouse".

日本語の概要は準備中です。原文の説明を表示しています。

Check the latest Claude (Anthropic), OpenAI Codex, and Google Gemini model releases from official primary sources, update model selections in this dotfiles repo, and update the Claude Code, Codex, and Gemini CLIs through their configured managers. Every run checks both the model settings and CLI for the selected provider, then scans the invoking repository for hardcoded model IDs. Use when the user asks to "モデル更新", "モデルを最新に", "最新モデル確認", "Codex/Claude Code/Gemini CLI本体の更新", "model bump", "update models", or "update agent CLIs". Do NOT use for one-off model selection in a single conversation, general model questions, or unrelated package updates.

Detect single-nucleotide crosslink (CL) sites in CLIP-seq data using truncation patterns (iCLIP/eCLIP CITS), crosslink-induced mutations (HITS-CLIP CIMS deletions, PAR-CLIP T-to-C), or HMM/kernel-density methods (PureCLIP, PARalyzer, CTK). Use when single-nucleotide resolution is required for motif registration (mCross), allele-specific binding (BEAPR), variant-effect prediction, or comparing crosslink chemistry across CLIP variants.

日本語の概要は準備中です。原文の説明を表示しています。

Comprehensive quality control for CLIP-seq libraries (eCLIP, iCLIP, iCLIP2, PAR-CLIP) covering library complexity (preseq), FRiP, IDR replicate reproducibility, read-distribution metagene, SMInput vs IgG control rationale, rRNA / snoRNA contamination, fragment-length distribution, and ENCODE-compliance thresholds. Use when assessing whether a CLIP library passed, deciding lenient vs stringent peak thresholds, comparing replicates with IDR rescue and self-consistency ratios, or distinguishing failed IP from over-amplified library.

日本語の概要は準備中です。原文の説明を表示しています。

Align preprocessed CLIP-seq reads (eCLIP, iCLIP, iCLIP2, PAR-CLIP) to genome with STAR or bowtie2 using crosslink-preserving parameters, choosing between unique-mapper-only and multi-mapper-aware alignment for repeat-binding RBPs, deciding STAR vs HISAT2 memory trade-offs, and applying ENCODE-compatible filters. Use when turning preprocessed CLIP FASTQ into a deduplicated, MAPQ-filtered BAM ready for peak calling or crosslink-site detection.

日本語の概要は準備中です。原文の説明を表示しています。

1Password CLIの導入と認証を確認し、保存したパスワードやAPIキーをコマンドや設定へ渡します。デスクトップ連携やサービスアカウントにも対応します。

• 1Password CLIを導入したいとき
• APIキーをコマンドに渡したいとき
• CIでサービスアカウント認証を使う

Gemini CLIで質問への回答や文章生成、ファイル内容の要約を単発で実行します。モデルやJSON出力の指定、拡張機能などの管理コマンドも扱います。

• メモファイルを要約したいとき
• 単発の依頼で文章を生成したいとき
• 回答をJSON形式で受け取りたいとき

対話型CLIやSSH、開発用プロセスを新しいターミナルで開くために、実行内容と引数を保った起動計画を作り、対応環境の検出や復旧手順も扱うスキル。

• 対話型CLIを別ウィンドウで開きたいとき
• SSH接続や開発プロセスの起動
• 起動せずに実行計画を確認したいとき

電子カルテに組み込む臨床判断支援を設計し、薬の相互作用や用量の検証、臨床スコアの計算、警告の重要度に応じた画面制御とテストを実装するスキル。

• 薬の相互作用とアレルギー確認の実装
• 患者情報に応じた用量検証
• NEWS2などの臨床スコアの実装

Use when preparing, tagging, and publishing an apps/cli npm release. Guides changelog drafting, apps/cli/package.json version bumps, cli-vX.Y.Z tags, local npm publishing, and the publish-cli GitHub workflow.

日本語の概要は準備中です。原文の説明を表示しています。

Prepare for client review meetings with portfolio performance summary, allocation analysis, talking points, and action items. Pulls together account data into a concise meeting-ready format. Use before quarterly reviews, annual checkups, or ad-hoc client meetings. Triggers on "client review", "meeting prep for [client]", "quarterly review", "prep for [client name]", or "client meeting".

日本語の概要は準備中です。原文の説明を表示しています。

This skill should be used when the user wants to "deploy an agent", "deploy my ADK agent", "set up CI/CD", "configure secrets", "troubleshoot a deployment", or needs guidance on Agent Runtime, Cloud Run, or GKE deployment targets, or binding an agent to an Agent Gateway. Covers deployment workflows, service accounts, rollback, and production infrastructure. Applies to any framework agents-cli deploys (ADK, LangChain, ...). Part of the agents-cli skills suite. Do NOT use for agent API code patterns (ADK: use google-agents-cli-adk-code), evaluation (use google-agents-cli-eval), or project scaffolding (use google-agents-cli-scaffold).

日本語の概要は準備中です。原文の説明を表示しています。

When the user wants to implement, optimize, or use App Clips for app discovery and conversion. Use when the user mentions "App Clip", "app clip code", "mini app", "instant app", "App Clip card", "App Clip link", "no download required", "instant experience", or wants to understand how App Clips appear in App Store search. For general App Store discoverability, see aso-audit. For marketing campaigns, see ua-campaign.

日本語の概要は準備中です。原文の説明を表示しています。

Call protein-RNA binding sites from CLIP-seq BAM with CLIPper, PureCLIP, Skipper, Piranha, omniCLIP, CTK, CLAM, or Paraclu. Use when choosing between coverage-based, HMM-based, beta-binomial window-based, and crosslink-site-based peak callers; applying ENCODE eCLIP thresholds (log2 IP/SMInput >= 3, -log10 p >= 3); deciding when SMInput is mandatory; or reconciling peak-set discordance between callers for the same RBP.

日本語の概要は準備中です。原文の説明を表示しています。

Identify direct miRNA-target interactions from AGO HITS-CLIP, AGO-CLEAR-CLIP (chimeric reads), HEAP (Halo-Ago2 mouse), chimeric eCLIP / miR-eCLIP (deep miRNA-target profiling), or CLASH using chimeric-read processing pipelines, seed-pairing analysis, and 3' auxiliary pairing rules. Use when distinguishing direct miRNA targets from indirect, integrating CLIP-derived target maps with TargetScan / miRDB / DIANA predictions, applying canonical 7mer-8mer seed matching with 3' UTR context, or recovering miRNA-mRNA chimeras at scale.

日本語の概要は準備中です。原文の説明を表示しています。

Turn complex legal analysis into clear, commercially useful client-facing advice. Use this whenever the user has dense legal material — drafting, internal analysis, counsel notes, research memos, pleadings, a case update, or correspondence — and wants it converted into something a client can actually understand and act on. Trigger on phrases like 'explain this to the client', 'put this in plain English', 'translate this for a non-lawyer', 'turn this into client-facing advice', 'make this client-ready', 'draft a client update', or when the user shares legal analysis and asks 'what does this mean for them'. Also trigger when the user wants a board summary, litigation risk update, or call script derived from legal material. The skill preserves legal nuance, uncertainty, and risk rather than oversimplifying — it makes advice usable, not just simpler.

日本語の概要は準備中です。原文の説明を表示しています。

Comprehensive R package for command-line interface styling, semantic messaging, and user communication. Use this skill when working with R code that needs to: (1) Format console output with inline markup and colors, (2) Display errors, warnings, or messages with cli_abort/cli_warn/cli_inform, (3) Show progress indicators for long-running operations, (4) Create semantic CLI elements (headers, lists, alerts, code blocks), (5) Apply themes and customize output styling, (6) Handle pluralization in user-facing text, (7) Work with ANSI strings, hyperlinks, or custom containers. Also use when migrating from base R message/warning/stop, debugging cli code, or improving existing cli usage.

日本語の概要は準備中です。原文の説明を表示しています。

Use when writing an OpenCLI adapter for a new site or adding a new command to an existing site. Guides end-to-end from first recon through field decoding, adapter coding, and verify. Replaces opencli-oneshot / opencli-explorer. For ad-hoc browser driving (no adapter), see opencli-browser instead; for a top-level orientation to opencli, see opencli-usage.

日本語の概要は準備中です。原文の説明を表示しています。

Call protein-RNA binding sites from CLIP-seq BAM with CLIPper, PureCLIP, Skipper, Piranha, omniCLIP, CTK, CLAM, or Paraclu. Use when choosing between coverage-based, HMM-based, beta-binomial window-based, and crosslink-site-based peak callers; applying ENCODE eCLIP thresholds (log2 IP/SMInput >= 3, -log10 p >= 3); deciding when SMInput is mandatory; or reconciling peak-set discordance between callers for the same RBP.

日本語の概要は準備中です。原文の説明を表示しています。

Identify direct miRNA-target interactions from AGO HITS-CLIP, AGO-CLEAR-CLIP (chimeric reads), HEAP (Halo-Ago2 mouse), chimeric eCLIP / miR-eCLIP (deep miRNA-target profiling), or CLASH using chimeric-read processing pipelines, seed-pairing analysis, and 3' auxiliary pairing rules. Use when distinguishing direct miRNA targets from indirect, integrating CLIP-derived target maps with TargetScan / miRDB / DIANA predictions, applying canonical 7mer-8mer seed matching with 3' UTR context, or recovering miRNA-mRNA chimeras at scale.

日本語の概要は準備中です。原文の説明を表示しています。

Think and work like an expert Climatologist. Use when a task calls for Climatologist judgment. Characterizes climate via WMO CLINO baselines (1991–2020 vs 1961–1990), ETCCDI indices, and teleconnection modes; bridges ERA5 climatology to CMIP6/ScenarioMIP SSP deltas (xsdba/QDM), optimal-fingerprint attribution, AR6 ERF/ECS/TCR, and proxy reconstructions (CPS/EIV, PAGES2k, MXD divergence)—distinct from weather forecasting and generic physical-climate narration.

日本語の概要は準備中です。原文の説明を表示しています。

Climate physics, forcing, feedback, and attribution. Covers the greenhouse effect and radiative forcing, climate sensitivity, fast and slow feedbacks, the paleoclimate record, detection and attribution science, regional climate impacts, and the distinction between weather, climate variability, and forced climate change. Use when reasoning about global warming mechanisms, interpreting temperature or CO2 records, evaluating attribution claims for extreme events, or distinguishing signal from natural variability.

日本語の概要は準備中です。原文の説明を表示しています。