「library」の検索結果

Turns Hi-C/Micro-C FASTQ into a deduplicated, filtered .pairs file with pairtools and decides whether the library worked. Covers the bwa mem -SP5M / bwa-mem2 / chromap --preset hic alignment idiom (mates mapped as independent single-end reads), pairtools parse vs parse2 and the walks-policy choice (5unique pairwise vs all for Pore-C/Micro-C concatemers), pair-type classification (keep UU and rescued UC), dedup (PCR vs optical/by-tile), select by pair_type/MAPQ/distance, restriction-fragment handling (restrict, Arima dual-enzyme, Micro-C/DNase fragment-free), and allele-specific phasing (pairtools phase to two coolers). The library-QC decision uses % long-range cis as the one-number quality metric, trans as the noise floor, orientation balance as fragment-map-free dangling-end/self-circle QC, and % duplicates as a complexity proxy. Use when processing Hi-C/Micro-C/Omni-C reads into pairs, judging library quality, handling multi-enzyme or restriction-agnostic protocols, or generating allele-specific contacts.

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Comprehensive quality control for CLIP-seq libraries (eCLIP, iCLIP, iCLIP2, PAR-CLIP) covering library complexity (preseq), FRiP, IDR replicate reproducibility, read-distribution metagene, SMInput vs IgG control rationale, rRNA / snoRNA contamination, fragment-length distribution, and ENCODE-compliance thresholds. Use when assessing whether a CLIP library passed, deciding lenient vs stringent peak thresholds, comparing replicates with IDR rescue and self-consistency ratios, or distinguishing failed IP from over-amplified library.

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ATAC-seq library quality control -- TSS enrichment, FRiP, fragment-size periodicity, library complexity (NRF/PBC1/PBC2), mitochondrial fraction, and ENCODE 4 thresholds. Use when assessing whether an ATAC-seq library passes ENCODE acceptance criteria, diagnosing transposition artefacts, comparing Omni-ATAC vs standard prep quality, or selecting which replicates to drop before peak calling.

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Use when moving skills between library workspaces or upgrading from a personal library to a team library. Export from one workspace, import into another.

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Query a user's TrailSnap photo library through scoped MCP tools to find photos, reconstruct memories, build person timelines, create evidence-backed narratives, or propose an album plan for explicit in-app approval. Use for the user's own TrailSnap library; never claim a proposal was executed or changed the library.

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Correctly call native (C/C++) libraries from .NET using P/Invoke and LibraryImport. Covers function signatures, string marshalling, memory lifetime, SafeHandle, and cross-platform patterns. USE FOR: writing new P/Invoke or LibraryImport declarations, reviewing or debugging existing native interop code, wrapping a C or C++ library for use in .NET, diagnosing crashes, memory leaks, or corruption at the managed/native boundary. DO NOT USE FOR: COM interop, C++/CLI mixed-mode assemblies, or pure managed code with no native dependencies.

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Inspect or save reusable FF&E library products through reviewed, guarded transactions. Use for explicit library imports, corrections or recovery; adopted selections and workbook reconciliation belong to master-schedule.

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Build a project skill library in .claude/skills/ via discovery, parallel authoring, and review. Use when packaging tribal knowledge. Do not use for one skill.

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Fix macOS app hard crashes (EXC_CRASH / SIGKILL) caused by accessing TCC-protected APIs without the matching Info.plist usage description key. Use when: (1) App crashes immediately when touching Photos, Contacts, Calendar, Reminders, Location, Microphone, Camera, Screen Recording, etc., (2) Crash report shows `Exception: EXC_CRASH (SIGKILL)` with `Termination namespace: TCC`, (3) Crash stack includes `TCC.__TCC_CRASHING_DUE_TO_PRIVACY_VIOLATION__`, (4) Termination details contain "This app has crashed because it attempted to access privacy-sensitive data without a usage description", (5) Flutter macOS publish / gallery-save flow crashes on Gal.putVideo, PHPhotoLibrary, CNContactStore, etc. Critical distinction: macOS does NOT return a deny error — it SIGKILLs the process. This skill also covers the NSPhotoLibraryUsageDescription vs NSPhotoLibraryAddUsageDescription distinction that trips many apps.

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Fix Flutter macOS app crash at launch due to FFmpeg Kit library loading failure. Use when: (1) macOS app builds successfully but crashes immediately on launch, (2) Crash log shows "Library not loaded: libfontconfig.1.dylib" or similar homebrew library, (3) Error mentions "code signature not valid for use in process" with "different Team IDs", (4) Using ffmpeg_kit_flutter_new (Full GPL variant). The Full GPL variant has external dependencies on homebrew libraries that fail macOS code signing. Switch to ffmpeg_kit_flutter_new_min.

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Comprehensive quality control for CLIP-seq libraries (eCLIP, iCLIP, iCLIP2, PAR-CLIP) covering library complexity (preseq), FRiP, IDR replicate reproducibility, read-distribution metagene, SMInput vs IgG control rationale, rRNA / snoRNA contamination, fragment-length distribution, and ENCODE-compliance thresholds. Use when assessing whether a CLIP library passed, deciding lenient vs stringent peak thresholds, comparing replicates with IDR rescue and self-consistency ratios, or distinguishing failed IP from over-amplified library.

日本語の概要は準備中です。原文の説明を表示しています。

ATAC-seq library quality control -- TSS enrichment, FRiP, fragment-size periodicity, library complexity (NRF/PBC1/PBC2), mitochondrial fraction, and ENCODE 4 thresholds. Use when assessing whether an ATAC-seq library passes ENCODE acceptance criteria, diagnosing transposition artefacts, comparing Omni-ATAC vs standard prep quality, or selecting which replicates to drop before peak calling.

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Build a 10-component messaging library from your positioning + ICP + competitor aggregate. Produces positioning statement, value propositions, key differentiators, taglines, CTA variants, proof points, messaging hierarchy, status-quo alternatives. Writes to marketing/messaging/messaging.md as the canonical messaging library every downstream content / paid / outbound / lifecycle skill reads. Triggers - "product messaging", "messaging library", "value props", "messaging framework", "build messaging", "messaging components"

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Use whenever writing, reviewing, or debugging .NET/C# code that uses the BallisticCalculator NuGet package (namespace BallisticCalculator) or its Gehtsoft.Measurements unit types — even when the user doesn't name the package explicitly but is clearly doing external/interior ballistics in .NET (bullet drop, velocity, energy, windage, spin drift, time of flight, zeroing a scope) for rifles, air rifles, bows, or artillery. Covers the full public API (Ammunition, Rifle, Atmosphere, Wind, ShotParameters, TrajectoryCalculator, TrajectoryPoint); standard, custom, .drg, and multi-BC drag tables; saving/loading data and building your own file format around it (BXml and System.Text.Json serialization); and building or rendering scope reticles (e.g. to SVG). Also use it for this library's Gehtsoft.Measurements Measurement<T> unit types (DistanceUnit, VelocityUnit, AngularUnit, WeightUnit, PressureUnit, …). Skip for: generic physics or projectile-motion exercises, a different ballistics library (e.g. GNU/JBM), game-engine or Unity projectile motion, plain unit conversions, and non-code ballistics questions (load-data or forensics advice). Self-contained: no access to the library source or binaries is required — prefer this over scanning the package to rediscover the API. Describes 1.1.13+, including the named ZeroRangeCantBeReachedException / TrajectoryCannotBeCalculatedException failures.

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Onboarding workflow for cross-library KB query in a consulting practice. Discovers existing user-scope library registrations, prompts for additions, validates each library, helps activate the relevant ones for the current project, runs a smoke test, and reports a clear "ready" or "issues to fix" verdict. Use --verify-only to skip prompting and just validate existing setup (sub-task 23 of

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File a librarian query result back into the library as a new page with provenance tracking. Karpathy's "good answers can be filed back into the wiki as new pages" insight made concrete. The library compounds from explorations, not just from external sources.

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Preserve and conserve library and archival materials. Covers environmental controls (temperature, humidity, light), handling procedures, book repair techniques (torn pages, loose spines, foxing), acid-free storage, digitization for preservation, and disaster recovery planning. Use when establishing preservation practices for a new or existing collection, when materials show signs of deterioration, when setting up environmental controls for storage, when planning digitization to preserve fragile originals, or when creating a disaster recovery plan for a library or archive.

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Build and maintain a library collection through acquisitions, weeding (deaccessioning), collection assessment, reader advisory, and interlibrary loan coordination. Covers selection criteria, collection development policies, the CREW/MUSTIE method for weeding, usage analysis, and responsive collection management. Use when building a new collection with a defined scope and budget, assessing an existing collection for gaps or outdated materials, when shelves are overcrowded and systematic weeding is needed, or when establishing a formal collection development policy.

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Browse, filter, and explore a curated library of 2,500+ AI prompts organized by 19 categories, 17 models, and 4 output types. View stats, discover trending styles, and export prompt collections. Use when user says "prompt library", "browse prompts", "show categories", "list prompts", "prompt collection", "explore prompts", or "what prompts do we have".

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Use when reviewing or auditing a library of Claude Code skills, agents, slash commands, and workflows — frontmatter correctness, routing quality, tool allowlists, command arg-hints, workflow meta/phase coherence, cross-reference coherence, single-responsibility, file structure, and anti-pattern detection. Triggers on mentions of "review skills", "audit agents", "skill library", "agent definition review", "review this command", "review this workflow", "is this skill right", or when iterating on `.claude/skills/`, `.claude/agents/`, `.claude/commands/`, or `.claude/workflows/` directories. For code review of source code see code-review-and-quality.

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Shape reusable library APIs for Compose modules. Design public composables, split sample-app code from reusable library code, review naming and extensibility.

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Comprehensive quality control for CLIP-seq libraries (eCLIP, iCLIP, iCLIP2, PAR-CLIP) covering library complexity (preseq), FRiP, IDR replicate reproducibility, read-distribution metagene, SMInput vs IgG control rationale, rRNA / snoRNA contamination, fragment-length distribution, and ENCODE-compliance thresholds. Use when assessing whether a CLIP library passed, deciding lenient vs stringent peak thresholds, comparing replicates with IDR rescue and self-consistency ratios, or distinguishing failed IP from over-amplified library.

日本語の概要は準備中です。原文の説明を表示しています。

ATAC-seq library quality control -- TSS enrichment, FRiP, fragment-size periodicity, library complexity (NRF/PBC1/PBC2), mitochondrial fraction, and ENCODE 4 thresholds. Use when assessing whether an ATAC-seq library passes ENCODE acceptance criteria, diagnosing transposition artefacts, comparing Omni-ATAC vs standard prep quality, or selecting which replicates to drop before peak calling.

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Retrieve current documentation, API references, and code examples for any library, framework, SDK, CLI tool, or cloud service — including well-known ones like React, Next.js, Prisma, Django, or Spring Boot. Use for API syntax, configuration options, version migrations, setup instructions, and library-specific debugging, even when you already think you know the answer: training data on API details and signatures is frequently outdated. Prefer this over web search for library documentation.

日本語の概要は準備中です。原文の説明を表示しています。