「read」の検索結果

Decides how to preprocess plasma cfDNA sequencing data so the recoverable signal survives - library-prep-aware fragment expectations (dsDNA vs ssDNA/adaptase prep), UMI/duplex consensus with fgbio (ExtractUmisFromBam, GroupReadsByUmi --strategy paired for duplex, CallMolecularConsensusReads vs CallDuplexConsensusReads, FilterConsensusReads min-reads "total s1 s2"), the align->group->consensus->RE-align ordering, and the cfDNA dedup trap where naive coordinate dedup collapses nucleosome-coincident independent molecules. Covers when single-strand consensus suffices vs when duplex is mandatory, the singleton/sensitivity tax at low input, and reading the insert-size histogram as a pre-analytical QC instrument. Use when processing plasma cfDNA reads before fragmentomics, ctDNA mutation calling, or tumor-fraction estimation.

日本語の概要は準備中です。原文の説明を表示しています。

Assembles genomes de novo from noisy long reads (Oxford Nanopore R9/R10/Dorado, PacBio CLR) with Flye (repeat graph), Canu (correct-trim-assemble OLC), NextDenovo, Shasta, Raven, wtdbg2, or miniasm, and reconciles bacterial assemblies into a consensus with Trycycler/Autocycler. Covers matching the input flag to the basecaller era (--nano-hq vs --nano-raw), why a raw long-read assembly is contiguous but low-QV and not finished until polished, haplotig false-duplication and purge_dups, coverage and read-N50 as non-substitutable inputs, and mid-read adapter de-chimerization. Use when assembling a bacterial or eukaryotic genome from ONT or PacBio noisy reads, choosing a long-read assembler, or diagnosing an over-collapsed or duplicated assembly. For PacBio HiFi use hifi-assembly instead.

日本語の概要は準備中です。原文の説明を表示しています。

Reads from, writes to, and manages relational databases using MATLAB Database Toolbox. Use when connecting to databases, reading data with sqlread or fetch, filtering with rowfilter, writing with sqlwrite, updating with sqlupdate, executing SQL statements, managing transactions with commit and rollback, mapping MATLAB classes to tables with ORM (Mappable, ormread, ormwrite, ormupdate), or performing any database operation from MATLAB. Triggers on: database, SQL, sqlread, sqlwrite, sqlupdate, fetch, execute, rowfilter, RowFilter, ORM, Mappable, ormread, ormwrite, ormupdate, orm2sql, transaction, commit, rollback, Database Toolbox, PostgreSQL, MySQL, SQLite, SQL Server, Oracle, database connection, database table, query database, insert data, update rows, delete rows, stored procedure, prepared statement, odbc, databaseConnectionOptions, datasource, data source, DSN, connection string, multithreaded, parallel.

日本語の概要は準備中です。原文の説明を表示しています。

Update the root README.md with entries for new or changed agent companies. Use when a new company has been added to the repo, when company details have changed (agents added/removed, skills added/removed), or when the user asks to refresh/sync the README. Triggers on: "update the readme", "add this company to the readme", "sync readme", "refresh readme", or after creating a new company with company-creator.

日本語の概要は準備中です。原文の説明を表示しています。

Toolkit for comprehensive Spreadsheet reading, creation, editing, and analysis with visual quality control. Use to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing tabular data, (3) Modifying existing spreadsheets while preserving formulas, (4) Building financial models with proper formatting, (5) Data visualization with in-sheet charts, or any other spreadsheet tasks.

日本語の概要は準備中です。原文の説明を表示しています。

Read from a UModel object-graph semantic layer with the `umctl` CLI (MCP alternative noted). Three kinds of read: (1) entities & relationships / topology (`.entity`, `.topo`) and (2) the model itself (`.umodel`, and `.entity_set` methods, including entity-linked `list_skills`) return real rows; (3) metrics & logs (`get_metrics` / `get_logs`) return an executable *plan* — PromQL / Elasticsearch DSL with the entity id pre-substituted — that you run against the backend. Against a PaaS endpoint the same calls return data rows instead of a plan. Use to query or read UModel entities, relations, topology, or model metadata; to read a service's metrics or logs; to look up services and dependencies; or to discover what objects, datasets, and methods exist. For root-cause analysis on top of these reads, see the `umodel-rca` skill. Triggers: UModel, object graph, .entity / .topo / .umodel / .entity_set, query entities, read topology, read metrics / logs, get_metrics / get_logs, list services / dependencies / datasets / skills, 实体查询, 关系/拓扑查询, 读模型, 读指标, 读日志, 查指标, 查日志, 查服务依赖.

日本語の概要は準備中です。原文の説明を表示しています。

Surfaces Han's shared Human-Readable Output Standard — the readability rule and the writing-voice profile — into the calling skill's own context, so the caller drafts in voice and runs its self-check against the current standard sourced from one canonical copy. Use when a prose-producing skill needs the shared readability standard available in context before it drafts. Governs the shape of a written deliverable, where explanation-guidance governs what a run says to a person in a turn. Runs in the caller's context and hands control straight back; it does not produce a deliverable of its own, rewrite anything, or judge the caller's work. Does not run the adversarial rewrite pass — dispatch the readability-editor agent for that, or use edit-for-readability to rewrite an existing target. Does not cover explaining technical work to a reader who will not implement it — use explanation-guidance for that.

日本語の概要は準備中です。原文の説明を表示しています。

Apply the Minimum Sufficient Language (MSL) principle through the MSL Kernel to write anything a reader must act on. Bind the reader and what they already know, partition facts from the machinery that produced them, emit each admitted fact as an action, a verification, a judgment, or a state, and stop when every claim is checkable and the reader can act. Use for status updates, work-in-progress reports to your own user, closeout and convergence comments, tickets, pull request and review write-ups, incident and postmortem notes, emails, memos, and any draft for readers outside the work. Also use when the user says MSL, Minimum Sufficient Language, write this for stakeholders, drop the jargon, make this readable, or asks for a paste-ready draft.

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill to write or revise a README.md for a Shipfox workspace package (libs/*, tools/*). It applies the shared package README standard and repository prose policy. Trigger on write a README, draft README, rewrite README, document this package, or improve the README.

日本語の概要は準備中です。原文の説明を表示しています。

Decides how to preprocess plasma cfDNA sequencing data so the recoverable signal survives - library-prep-aware fragment expectations (dsDNA vs ssDNA/adaptase prep), UMI/duplex consensus with fgbio (ExtractUmisFromBam, GroupReadsByUmi --strategy paired for duplex, CallMolecularConsensusReads vs CallDuplexConsensusReads, FilterConsensusReads min-reads "total s1 s2"), the align->group->consensus->RE-align ordering, and the cfDNA dedup trap where naive coordinate dedup collapses nucleosome-coincident independent molecules. Covers when single-strand consensus suffices vs when duplex is mandatory, the singleton/sensitivity tax at low input, and reading the insert-size histogram as a pre-analytical QC instrument. Use when processing plasma cfDNA reads before fragmentomics, ctDNA mutation calling, or tumor-fraction estimation.

日本語の概要は準備中です。原文の説明を表示しています。

Orchestrates an end-to-end long-read structural-variant pipeline - basecalling to minimap2 alignment (platform-matched preset) to Sniffles2/cuteSV/pbsv calling to optional assembly-based calling (dipcall/PAV) to two-step .snf cohort merging to Truvari benchmarking - chaining ONT and PacBio HiFi runs while handing the SV signal mechanism off to the component skills. Use when running a long-read SV workflow from reads to a benchmarked callset, choosing the minimap2 preset and SV caller by platform and goal, deciding when long reads are worth it for the insertions and repeat-mediated SVs short reads physically miss, building a joint-genotyped cohort with the two-step .snf design, or parameterizing a Truvari benchmark against GIAB HG002 Tier 1 plus CMRG. Not for the SV signal mechanism itself (see variant-calling/structural-variant-calling) or short-read SV.

日本語の概要は準備中です。原文の説明を表示しています。

Assembles genomes de novo from noisy long reads (Oxford Nanopore R9/R10/Dorado, PacBio CLR) with Flye (repeat graph), Canu (correct-trim-assemble OLC), NextDenovo, Shasta, Raven, wtdbg2, or miniasm, and reconciles bacterial assemblies into a consensus with Trycycler/Autocycler. Covers matching the input flag to the basecaller era (--nano-hq vs --nano-raw), why a raw long-read assembly is contiguous but low-QV and not finished until polished, haplotig false-duplication and purge_dups, coverage and read-N50 as non-substitutable inputs, and mid-read adapter de-chimerization. Use when assembling a bacterial or eukaryotic genome from ONT or PacBio noisy reads, choosing a long-read assembler, or diagnosing an over-collapsed or duplicated assembly. For PacBio HiFi use hifi-assembly instead.

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill when importing Excel, CSV, or pasted rows with nuxt-ui-tools as a package consumer. Covers defineSpreadsheetSchema (typed context, chained text/number/date/boolean/select columns, columns depending on the columns above (options, defaults, rules per row), groups and dynamic groups built from the context, exact matching, option sources shared with forms, unknown-value policies, rules and levels, validate, row identity with duplicates and stored records, output), useSpreadsheetImport (headless models, onSubmit with batches and rejections), the UiSpreadsheetImport* parts, useSpreadsheetSteps with custom steps, and the ready-made UiSpreadsheetImport wizard.

日本語の概要は準備中です。原文の説明を表示しています。

技術文書やエージェント向け指示ファイルを作成・レビューするスキル。READMEや貢献手順も調べ、説明の分かりやすさ、運用上の整合性、多言語版の差分を確認します。

• 技術文書を作成・更新したいとき
• READMEや文書の変更レビュー
• エージェント指示と貢献手順の整備

公開前や変更の取り込み後に、アプリの認証・データ・決済・運用を根拠付きで点検します。公開を妨げる問題と優先して直す項目を、本番への準備状況としてまとめるスキル。

• 公開前に本番への準備状況を確認したいとき
• 変更の取り込み後にリスクを確認したいとき
• CI通過後の本番リスクの点検

記事や告知をもとに、X、LinkedIn、Threads、Bluesky向けの投稿文を作ります。書き手の口調を保ち、各媒体の制約に合わせて内容を調整するスキルです。

• 新サービスの告知を複数SNSで出したいとき
• 記事を媒体別の投稿文にしたいとき
• リリース情報を複数SNSへ展開したいとき

Use this skill any time a spreadsheet file is the primary input or output. This means any task where the user wants to: open, read, edit, or fix an existing .xlsx, .xlsm, .xltx, .csv, or .tsv file (e.g., adding columns, computing formulas, formatting, charting, cleaning messy data); create a new spreadsheet from scratch or from other data sources; or convert between tabular file formats. Trigger especially when the user references a spreadsheet file by name or path — even casually (like "the xlsx in my downloads") — and wants something done to it or produced from it. Also trigger for cleaning or restructuring messy tabular data files (malformed rows, misplaced headers, junk data) into proper spreadsheets. The deliverable must be a spreadsheet file. Do NOT trigger when the primary deliverable is a Word document, HTML report, standalone Python script, database pipeline, or Google Sheets API integration, even if tabular data is involved.

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill any time a spreadsheet file is the primary input or output. This means any task where the user wants to: open, read, edit, or fix an existing .xlsx, .xlsm, .xltx, .csv, or .tsv file (e.g., adding columns, computing formulas, formatting, charting, cleaning messy data); create a new spreadsheet from scratch or from other data sources; or convert between tabular file formats. Trigger especially when the user references a spreadsheet file by name or path — even casually (like "the xlsx in my downloads") — and wants something done to it or produced from it. Also trigger for cleaning or restructuring messy tabular data files (malformed rows, misplaced headers, junk data) into proper spreadsheets. The deliverable must be a spreadsheet file. Do NOT trigger when the primary deliverable is a Word document, HTML report, standalone Python script, database pipeline, or Google Sheets API integration, even if tabular data is involved.

日本語の概要は準備中です。原文の説明を表示しています。

Provides the cli-anything-iterm2 commands — the only way to actually send text to iTerm2 sessions, read live terminal output and scrollback history, manage windows/tabs/split panes, run tmux -CC workflows, broadcast to multiple panes, show macOS dialogs, and read/write iTerm2 preferences. Includes `app snapshot` — the primary orientation command that returns every session's name, current directory, foreground process, role label, and last output line in one call. Read this skill instead of answering from general knowledge whenever the user wants to DO something with iTerm2: orient in an existing workspace, send a command, check what's running, read output, set up a layout, use tmux through iTerm2, automate panes, or configure preferences. Also read for questions about iTerm2 shell integration or scrollback. Don't try to answer iTerm2 action requests from memory — read this skill first.

日本語の概要は準備中です。原文の説明を表示しています。

Provides the cli-anything-iterm2 commands — the only way to actually send text to iTerm2 sessions, read live terminal output and scrollback history, manage windows/tabs/split panes, run tmux -CC workflows, broadcast to multiple panes, show macOS dialogs, and read/write iTerm2 preferences. Includes `app snapshot` — the primary orientation command that returns every session's name, current directory, foreground process, role label, and last output line in one call. Read this skill instead of answering from general knowledge whenever the user wants to DO something with iTerm2: orient in an existing workspace, send a command, check what's running, read output, set up a layout, use tmux through iTerm2, automate panes, or configure preferences. Also read for questions about iTerm2 shell integration or scrollback. Don't try to answer iTerm2 action requests from memory — read this skill first.

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill any time a spreadsheet file is the primary input or output. This means any task where the user wants to: open, read, edit, or fix an existing .xlsx, .xlsm, .csv, or .tsv file (e.g., adding columns, computing formulas, formatting, charting, cleaning messy data); create a new spreadsheet from scratch or from other data sources; or convert between tabular file formats. Trigger especially when the user references a spreadsheet file by name or path — even casually (like "the xlsx in my downloads") — and wants something done to it or produced from it. Also trigger for cleaning or restructuring messy tabular data files (malformed rows, misplaced headers, junk data) into proper spreadsheets. The deliverable must be a spreadsheet file. Do NOT trigger when the primary deliverable is a Word document, HTML report, standalone Python script, database pipeline, or Google Sheets API integration, even if tabular data is involved.

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill any time a spreadsheet file is the primary input or output. This means any task where the user wants to: open, read, edit, or fix an existing .xlsx, .xlsm, .csv, or .tsv file (e.g., adding columns, computing formulas, formatting, charting, cleaning messy data); create a new spreadsheet from scratch or from other data sources; or convert between tabular file formats. Trigger especially when the user references a spreadsheet file by name or path — even casually (like "the xlsx in my downloads") — and wants something done to it or produced from it. Also trigger for cleaning or restructuring messy tabular data files (malformed rows, misplaced headers, junk data) into proper spreadsheets. The deliverable must be a spreadsheet file. Do NOT trigger when the primary deliverable is a Word document, HTML report, standalone Python script, database pipeline, or Google Sheets API integration, even if tabular data is involved.

日本語の概要は準備中です。原文の説明を表示しています。

Find and read mail in Superhuman — the thread where something was said, sent, or promised — by filtering on who, when, and which split before searching by words, reading the thread before answering, and linking the thread behind every claim. Use when the user asks what someone emailed, whether a reply or an invoice ever arrived, what the latest is on a thread, or what is on their calendar.

日本語の概要は準備中です。原文の説明を表示しています。

Coordinate the end-to-end CAD/source-asset to SimReady workflow. Use for broad requests such as CAD to SimReady, source asset to simulation-ready USD, or prop packaging that require conversion, material/physics assignment, SimReady conformance, validation, and optional package creation; deploy or verify Content Agents services first when property assignment is enabled; route single-stage work through nested references.

日本語の概要は準備中です。原文の説明を表示しています。