「occupancy」の検索結果

Processes eDNA metabarcoding from raw paired-end reads to species tables, navigating ASV (DADA2, UNOISE3) vs OTU (swarm v2) decision (Callahan 2017 vs Schloss multi-copy-16S critique), marker/primer choice (Leray COI, MiFish 12S, 515F/806R 16S, ITS2) with primer-specific bias, OBITools3 v3 command-name break (obi stats plural; .tar.gz taxonomy), tag-jumping with dual-indexing (Schnell 2015; NovaSeq 10x MiSeq), decontam as screening-not-classifier (Davis 2018), read-counts-not-abundance critique (Lamb 2019), site-occupancy modeling (Ficetola 2015), Naive-Bayes calibration limits (Bokulich 2018), and eDNA decay (Strickler 2015). Use when going from raw eDNA FASTQ to species tables, picking marker + denoising pipeline, deciding whether read counts represent abundance, applying occupancy modeling, configuring OBITools3 v3, or interpreting decontam output. Not for clinical 16S microbiome (see microbiome/amplicon-processing).

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Calculate code occupant loads by area with gross/net factors and jurisdiction checks. Use for "how many people can this space hold," IBC Table 1004.5, egress inputs, or occupancy-load reports; not for workplace headcount planning.

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Apply software pipelining (double-buffering) to a tiled GPU kernel to overlap global memory loads with Tensor Core computation. Covers prologue/loop/epilogue restructuring, LDG-register vs cp.async (LDGSTS) variant selection based on compute/load ratio, shared memory budget verification against architecture-specific occupancy cliffs, and SASS-level verification of load/compute overlap.

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Systematically identify whether a GPU kernel is compute-bound, memory-bound, or latency-bound using roofline analysis, occupancy calculations, compute/load ratio per tile, and SASS instruction inspection. Produces a decision matrix for optimization strategy selection (cp.async, warp interleaving, tiling, double-buffering, or CuAssembler hand-tuning).

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Processes eDNA metabarcoding from raw paired-end reads to species tables, navigating ASV (DADA2, UNOISE3) vs OTU (swarm v2) decision (Callahan 2017 vs Schloss multi-copy-16S critique), marker/primer choice (Leray COI, MiFish 12S, 515F/806R 16S, ITS2) with primer-specific bias, OBITools3 v3 command-name break (obi stats plural; .tar.gz taxonomy), tag-jumping with dual-indexing (Schnell 2015; NovaSeq 10x MiSeq), decontam as screening-not-classifier (Davis 2018), read-counts-not-abundance critique (Lamb 2019), site-occupancy modeling (Ficetola 2015), Naive-Bayes calibration limits (Bokulich 2018), and eDNA decay (Strickler 2015). Use when going from raw eDNA FASTQ to species tables, picking marker + denoising pipeline, deciding whether read counts represent abundance, applying occupancy modeling, configuring OBITools3 v3, or interpreting decontam output. Not for clinical 16S microbiome (see microbiome/amplicon-processing).

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Processes eDNA metabarcoding from raw paired-end reads to species tables, navigating ASV (DADA2, UNOISE3) vs OTU (swarm v2) decision (Callahan 2017 vs Schloss multi-copy-16S critique), marker/primer choice (Leray COI, MiFish 12S, 515F/806R 16S, ITS2) with primer-specific bias, OBITools3 v3 command-name break (obi stats plural; .tar.gz taxonomy), tag-jumping with dual-indexing (Schnell 2015; NovaSeq 10x MiSeq), decontam as screening-not-classifier (Davis 2018), read-counts-not-abundance critique (Lamb 2019), site-occupancy modeling (Ficetola 2015), Naive-Bayes calibration limits (Bokulich 2018), and eDNA decay (Strickler 2015). Use when going from raw eDNA FASTQ to species tables, picking marker + denoising pipeline, deciding whether read counts represent abundance, applying occupancy modeling, configuring OBITools3 v3, or interpreting decontam output. Not for clinical 16S microbiome (see microbiome/amplicon-processing).

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Run RuView sensing applications — presence/occupancy, breathing & heart rate, activity & fall detection, 17-keypoint pose estimation (WiFlow), sleep monitoring & apnea screening, environment mapping, Mass Casualty Assessment (MAT), and the 3D point-cloud fusion demo. Use when someone wants to actually *do* something with a working RuView setup.

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Price changes within the store's guardrails, rate recommendations from demand, occupancy, or sell-through pace, promotions with their scope, depth, and dates, the markdown option for stock or capacity that is not selling, and the margin preview before any of it is staged. Not needed for explaining why revenue moved (performance-insights) or writing promotional copy (marketing-campaigns).

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Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. Use when analyzing chromatin organization, identifying nucleosome-free regions at promoters, or characterizing nucleosome occupancy patterns from ATAC-seq fragment size distributions.

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Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. Use when identifying TF occupancy patterns within accessible regions, as TF binding protects DNA from Tn5 cutting.

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Map nucleosome center positions, occupancy, and fuzziness from ATAC-seq fragment-size patterns using NucleoATAC, ATACseqQC, DANPOS3, or scprinter. Use when characterizing nucleosome organization at promoters and enhancers, calling +1/-1 nucleosomes flanking NFRs, generating V-plots for chromatin structure visualization, or comparing nucleosome positioning between conditions.

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Plan manipulator motion and generate trajectories in MATLAB. Use when the task involves moving a robot arm between configurations or poses — whether the user says "trajectory," "motion," "path," "move from A to B," or "plan." This skill applies regardless of whether the user explicitly mentions collisions or obstacles; if geometry exists in the workspace, collision safety is implicit. Triggers on: manipulatorRRT, manipulatorCHOMP, dlCHOMP, contopptraj, trapveltraj, collision-free path, motion planner, RRT, CHOMP, TOPPRA, path shortening, obstacle avoidance for manipulators, time-optimal trajectory, velocity limits, acceleration limits, occupancyMap3D, meshtsdf, collision objects as environment, trajectory between waypoints, joint interpolation, move between poses, constant velocity, trapezoidal profile, feed rate. Also triggers when a user has IK solutions or waypoints and needs to connect them — whether for time-optimal motion, constant-speed welding/cutting, or any other trajectory parameterization.

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Query ReMap 2022 TF ChIP-seq peak database via REST API and BED downloads. Retrieve TF peaks overlapping a region (chr:start-end), peaks near a gene, TFs by species, peaks filtered by biotype (promoter, enhancer), and BED files for a TF-cell type pair. Use for TF co-occupancy, regulatory annotation, and TF binding atlases. Use jaspar-database for PWM motifs; encode-database for ENCODE tracks.

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Decode a commercial lease before signing or renewing -- true all-in occupancy cost (base rent plus NNN/CAM plus escalations), the clauses that hurt small tenants (personal guarantees, relocation, restoration), and the negotiation asks landlords routinely grant. The lease is most SMBs' biggest fixed cost and least-read document.

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Processes environmental DNA metabarcoding data from raw amplicon reads to species occurrence tables using OBITools3, DADA2, and taxonomic assignment against BOLD, MIDORI2, or MitoFish databases. Handles COI, 12S, rbcL, and ITS barcode regions with primer removal, denoising, chimera detection, and contamination filtering via decontam. Includes occupancy modeling (occumb) for detection probability correction. Use when analyzing eDNA from water, soil, or bulk samples for biodiversity monitoring. Not for 16S human microbiome (see microbiome/amplicon-processing).

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Think and work like an expert Mammalogist. Use when a task calls for Mammalogist judgment. Reasons from mammalian life history and detectability-limited sampling through ASM MDD taxonomy, Sherman/camera-trap/SCR survey design, occupancy and SECR models, bat acoustic validation, and museum voucher discipline while treating trap heterogeneity, camera autocorrelation, closure violation, and WNS decontamination gaps as first-class failure modes.

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Think and work like an expert Herpetologist. Use when a task calls for Herpetologist judgment. Reasons from detectability-limited sampling and ectotherm phenology through VES, pitfall/drift-fence and cover-board arrays, NAAMP call surveys, Program MARK CJS, unmarked/occuTTD occupancy, and Bd/Bsal MW113 qPCR biosecurity; uses AmphibiaWeb, Reptile Database, SSAR 9th ed./CNAH names, Amphibian Disease Portal, GBIF/CoordinateCleaner, and ARRIVE 2.0 while treating weather bias, pitfall selectivity, and pathogen cross-contamination as first-class failure modes.

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Think and work like an expert Conservation Biologist. Use when a task calls for Conservation Biologist judgment. Reasons from IUCN Red List A–E and Green Status recovery metrics, PVA/Ne, occupancy and distance sampling (unmarked, msocc, RMark), prioritizr/Marxan SCP, Conservation Evidence and ROSES synthesis, counterfactual impact evaluation, METT/SMART PAME, and eDNA false-positive models while treating pseudoreplication, GBIF effort bias, offset baselines, and Red List≠priority conflation as first-class failure modes.

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Think and work like an expert Ecologist. Use when a task calls for Ecologist judgment. Reasons from Preston/Fisher SADs and Hutchinson fundamental vs realized niches; designs quadrat/transect and distance/occupancy surveys; filters GBIF issue flags and iNaturalist DQA; fits vegan/iNEXT/unmarked GLMMs with Moran's I and nlme/glmmTMB spatial correlation while treating pseudoreplication, effort bias, and citizen-science artifacts as first-class failure modes.

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Think and work like an expert Conservation Scientist. Use when a task calls for Conservation Scientist judgment. Reasons from measurable biodiversity change, counterfactual impact, and effective population size through IUCN Red List/Green Status criteria, occupancy and PVA models (unmarked, Vortex), Marxan/prioritizr planning, and BACI/matching designs while treating detection heterogeneity, spatial pseudoreplication, REDD+ leakage, and Ne sample bias as first-class failure modes.

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Parse architectural drawings, floor plans, and building code compliance documents using Vision AI. Extracts building type, occupancy, floor areas, room layouts, dimensions, and code parameters. Use when: reading PDF floor plans, analyzing architectural drawings, extracting building data from images or scanned documents.

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Use when writing, reviewing, or optimizing CUDA kernels targeting sm_120a (RTX 5090 / Consumer Blackwell, GB202) in the imp inference engine. Triggers on CUDA/PTX kernel code, shared-memory layout, bank conflicts, tensor-core MMA (mxf4nvf4, tf32, 3xTF32/3xFP16), GEMV/GEMM/attention/quantization/GDN-scan kernels, decode tok/s under expected, kernel emitting HMMA instead of mxf4nvf4, occupancy, register pressure, __launch_bounds__, spills, PDL. Pair with `benchmark-cuda` for measurement and `check-degeneration` after hot-path changes.

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Use when benchmarking, profiling, or A/B-testing CUDA kernels or end-to-end perf in the imp inference engine on RTX 5090 (sm_120), including refreshing tests/perf_baseline.json or publishing numbers to docs/BENCHMARKS.md and the README. Triggers on "benchmark kernel", "profile cuda", "ncu", "nsys", "kernel timing", "kernel sum", "occupancy", "bandwidth bound", "compute bound", "roofline", "perf baseline", "is this regression real", "decode dropped", "aggregate throughput", "two-image A/B", "prefill kernel A/B". Do NOT use for writing/optimizing kernel code (sm120-cuda-expert) or output-quality checks (check-degeneration).

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Use when analyzing warp divergence, memory coalescing, shared memory bank conflicts, cache behavior, atomics, or occupancy tradeoffs on NVIDIA and AMD GPUs. Not for tool commands: use cuda-profiling.

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