/supergraph:serena

Activate Serena MCP for LSP-powered code intelligence: symbol navigation, type diagnostics, and safe code surgery.

CRITICAL: Call initial_instructions first when starting any Serena work — it loads the Serena Instructions Manual with project-specific context.

When to Use

• Before complex refactors: rename across codebase, API signature changes
• When blast radius is unclear and graph tools lack symbol-level depth
• Before review: verify all call sites of changed symbols are updated
• During fix: triage type errors before running test suite
• After architectural changes: verify no orphaned references remain
• Large-scale refactors: safe_delete_symbol, rename_symbol across entire project

Setup

1. Load instructions (MANDATORY first step)

mcp__plugin_serena_serena__initial_instructions()
# or
mcp__serena__initial_instructions()

2. Activate project

mcp__plugin_serena_serena__activate_project()

3. Get project overview

mcp__plugin_serena_serena__get_symbols_overview()

Returns top-level symbols, classes, functions — fast structural map of the codebase.

Tool Reference

Navigation

Tool	Use case
find_symbol	Locate a symbol by name across codebase
find_declaration	Jump to where a symbol is declared
find_implementations	Find all implementations of an interface / abstract class
find_referencing_symbols	Find all callers and usages of a symbol

Setup / Lifecycle

Tool	Use case
activate_project	Register project with Serena — requires mcp__plugin_serena_serena__ namespace
get_current_config	Read Serena's current project configuration
open_dashboard	Open the Serena dashboard UI
execute_shell_command	Run shell commands (use with caution — confirm before destructive ops)

Diagnostics

Tool	Use case
get_diagnostics_for_file	IDE-level type errors, lint warnings for a specific file
get_symbols_overview	Project structure overview — top-level symbols map

Code Surgery (prefer over raw text edits)

Tool	Use case
replace_symbol_body	Replace function/method body — exact, no regex risk
insert_after_symbol	Insert code after a symbol definition
insert_before_symbol	Insert code before a symbol definition
rename_symbol	Safe rename across entire codebase
safe_delete_symbol	Delete symbol, verify no remaining references

File Operations

Tool	Use case
find_file	Find files by name pattern
list_dir	List directory contents
read_file	Read file content
search_for_pattern	Regex search across files
replace_content	Replace text content in file
create_text_file	Create a new text file

Memory (cross-session context)

Tool	Use case
write_memory	Save analysis findings for future sessions
read_memory	Recall prior analysis
list_memories	List all saved memories
edit_memory	Update an existing memory
rename_memory	Rename an existing memory entry
delete_memory	Remove stale memory

Memory Workflow

Use Serena memory to persist analysis state across sessions — avoids re-deriving complex blast radius mappings:

# Save findings after analysis:
mcp__serena__write_memory(title="auth-refactor-callers", content="find_referencing_symbols(login) = [A, B, C]")

# Recall in next session:
mcp__serena__read_memory(title="auth-refactor-callers")

Integration Points in Other Skills

Serena is invoked as optional hooks inside other supergraph skills:

Skill	Hook	Tools used
scan	Step 2b/3b	activate_project, get_symbols_overview
plan	Step 3b	find_referencing_symbols, find_implementations, write_memory
analyze	Step 2b	find_referencing_symbols, find_implementations
tdd	After RED, after GREEN, refactor	get_diagnostics_for_file, replace_symbol_body, rename_symbol
execute	Code surgery, post-execution	replace_symbol_body, rename_symbol, insert_after_symbol, find_referencing_symbols
fix	Pre-loop + each iteration	get_diagnostics_for_file, replace_symbol_body, rename_symbol
verify	Step 3b	get_diagnostics_for_file
review	Step 3b	find_referencing_symbols, find_implementations, get_diagnostics_for_file, write_memory
integration	Post-test	find_referencing_symbols, get_diagnostics_for_file
architecture	Step 2	get_symbols_overview
database-migrations	Impact check	find_referencing_symbols
webapp-testing	Component impact	find_referencing_symbols
flutter-dart-code-review	MCP-Integrated Review	get_diagnostics_for_file, find_referencing_symbols, find_implementations

MCP Tool Name Variants

Two variants may be present depending on project setup:

# Plugin variant (full feature set — file ops + symbol nav):
mcp__plugin_serena_serena__<tool>

# Direct variant (symbol navigation focus):
mcp__serena__<tool>

Use whichever responds. If both are available: prefer mcp__plugin_serena_serena__ for file operations, mcp__serena__ for symbol navigation.

Fallback

If Serena MCP is not available:

• Log: "Serena unavailable, skipping symbol intelligence step"
• Do NOT block workflow — all Serena steps are optional enhancements
• Fall back to graph MCP tools + Read/Bash/grep for the same purpose

Rules

• Always call initial_instructions before any other Serena tool
• Prefer replace_symbol_body and rename_symbol over raw text edits for code changes
• Use safe_delete_symbol instead of manual deletion — it verifies no remaining references
• Save complex analysis to Serena memory when it may be needed across sessions
• Never use execute_shell_command for destructive operations without user confirmation