Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between specific proteins, interaction evidence, confidence scores, protein interaction partners, or pathway enrichments.
インストール方法を見るインストールする前に、エージェントに与えられる指示の中身を確認できます。
This skill allows you to query the STRING database programmatically using a bundled Python CLI wrapper.
uv: Read the uv skill and follow its Setup instructions to ensure
uv is installed and on PATH.--output <file.tsv> is required.
Never read large outputs into context. Instead use jq, python or file
operations (grep, head) to process large output.map command for this.The CLI is at scripts/string_cli.py and should be run using uv run:
uv run scripts/string_cli.py <command> [options] --output /tmp/out.tsv
Read the following reference files based on the user's request:
To begin, read the reference file most appropriate to the current task to discover the correct CLI command.
まだレビューはありません。使ってみた感想をお寄せください。
概要と使いどころ
Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confidence metrics (pLDDT), domain boundary analysis, or disorder assessment. Do not use if the user only has a protein name, gene name, or amino acid sequence — ask for a UniProt ID first.
日本語の概要は準備中です。原文の説明を表示しています。
Constructs deep-links and URLs for the AlphaGenome Atlas website. Supports generating single-variant exploration links (1-based chr:pos:ref>alt), genomic locus views (1-based closed chr:start-end), candidate summary tables, and AlphaGenome reference vs. alternate predictions. Use whenever visualizing, exploring, charting, or linking genetic variants and genomic loci on the AlphaGenome Atlas, or when asked to inspect, view, or link predictions for a genomic variant.
日本語の概要は準備中です。原文の説明を表示しています。
Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about non-coding variant effects, pathogenicity, clinical significance, disease associations, functional effects, gene expression changes, splicing disruption, or regulatory effects in promoters and enhancers. Also use for resolving biological terms to tissue/cell-type ontologies (UBERON/CL) or analyzing variants in chr:pos:ref>alt format.
日本語の概要は準備中です。原文の説明を表示しています。
Score, annotate, and analyze the functional impact of genetic variants using AlphaGenome Variant Impact (AVI) scores. Query variants in chr:pos:ref>alt format, annotate VCF/tabular callsets, perform saturation mutagenesis window scans (1-based closed chr:start-end), and extract GENCODE v46 GTF gene/exon/junction coordinates all via the AlphaGenome Atlas API.
日本語の概要は準備中です。原文の説明を表示しています。
Query the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures. Use when the user asks about compounds, targets, IC50/Ki values, drug mechanisms, or structure searches.
日本語の概要は準備中です。原文の説明を表示しています。
Query ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID; check eligibility/inclusion criteria; count trials across conditions or time periods; identify a sponsor's trial portfolio; find recruiting trials for patient matching.
日本語の概要は準備中です。原文の説明を表示しています。