Route single-cell or single-nucleus RNA-seq FASTQs to public count-generation workflows and defer post-count matrix QC, annotation, clustering, and UMAP analysis to the embedded scrna-seq-qc skill.
インストール方法を見るインストールする前に、エージェントに与えられる指示の中身を確認できます。
Use this skill for scRNA-seq or snRNA-seq kickoff from FASTQs, Cell Ranger-style outputs, matrices, .h5, .h5ad, or .rds. This skill owns upstream intake and FASTQ-to-count routing; post-count QC, annotation, clustering, and UMAPs must route to the embedded scrna-seq-qc skill.
Confirm:
.h5, .h5ad, or .rdsFor FASTQs, prefer public alternatives:
nf-core/scrnaseqkb-pythonUse 10x Cell Ranger only when the user explicitly wants vendor-standard output and has accepted the 10x EULA.
Treat scRNA as three ordered rows in the plugin state and execute them sequentially:
Cell Ranger is an optional backend when vendor-standard output is explicitly required. It is not a standalone roadmap row and it is not the default execution target.
For post-count QC/annotation, use the embedded skills/scrna-seq-qc guidance. Route to that skill whenever the requested endpoint starts from a matrix, .h5, .h5ad, .rds, Cell Ranger output, or asks for QC, doublets, ambient RNA, annotation, clustering, UMAPs, or post-count differential summaries.
python plugins/ngs-analysis/scripts/ngs_preflight.py --pipeline scrnaseq --emit-install-plan
nf-core preflight run:
python plugins/ngs-analysis/scripts/run_nfcore_pipeline.py \
--pipeline scrnaseq \
--sample-sheet samplesheet.csv \
--profile docker \
--genome GRCh38 \
--bundle-root grch38_core=/refs/GRCh38
This adapter captures the generated params, pinned Nextflow command, resource gate, trace/report paths, run manifest, and visualization index in the standard plugin envelope. Add --revision <tag> for pinned nf-core execution and --execute only when Nextflow plus a container/HPC profile are ready.
Plugin-owned local execution:
python plugins/ngs-analysis/scripts/run_scrnaseq_fastq_to_count.py \
--sample-sheet samplesheet.csv \
--genome-fasta reference/genome.fa \
--annotation-gtf reference/genes.gtf \
--cb-whitelist reference/whitelist.txt \
--execute
The FASTQ-to-count runner emits advisory resources/resource_plan.json, resource_manifest.tsv, resource_env.sh, and resource_readiness.md outputs by default. Add --genome-build, --bundle-root <bundle>=<path>, and --require-resource-plan when STARsolo reference bundle completeness should block readiness.
Matrix-level QC should be handled by scrna-seq-qc and must preserve raw counts, per-sample metadata, filter decisions, doublet calls, ambient-RNA handling, and plot outputs.
まだレビューはありません。使ってみた感想をお寄せください。
概要と使いどころ
Make data visualizations accessible and inclusive. Use when the user needs chart or diagram accessibility guidance, text alternatives for complex visuals, color and contrast review, keyboard support, reduced-motion behavior for animation or parallax, or an accessibility QA workflow for exported figures, UML-like diagrams, and dashboards.
日本語の概要は準備中です。原文の説明を表示しています。
Apply consistent photo adjustments across a set of images so they look like they were edited together. Use this skill whenever the user says "make my photos look cohesive", "give all these the same style", "apply a warm and golden feel to all of these", "make this cinematic", "match the look across my photos", "edit all my travel photos the same way", "batch edit these", "make these consistent", "fix my phone photos", or uploads a folder of photos and wants a unified, polished result. Also triggers for requests like "apply a preset to all of these", "make these look professional", or "they were shot in mixed lighting — can you fix them all". Outputs direct final image URLs plus an in-chat preview grid and optional Firefly Board link. Access: 🔐 Signed-In required | Gen AI: ❌
日本語の概要は準備中です。原文の説明を表示しています。
Use when a user wants to see their logo, design, or sketch on a product or scene mockup — mugs, t-shirts, business cards, hats, phone screens, posters, billboards, or similar. Triggers on "create mockups", "show my logo on products", or any logo upload with a request to visualize it on items. Access: 🔐 Signed-In required | Gen AI: ✅ Adobe Firefly via `image_generate` used for design creation, sketch polishing, and mockup scene generation
日本語の概要は準備中です。原文の説明を表示しています。
Resize, crop, or export any image or video into platform-ready social media assets using Adobe Creative Cloud tools. Use this skill when a user wants to prepare a photo, image, or video for one or more social platforms — Instagram, TikTok, LinkedIn, Facebook, YouTube, Snapchat, Pinterest, Threads, or X/Twitter. Triggers on: "prepare my image for Instagram", "resize for TikTok", "get this ready to post", "make versions for all platforms", "social media sizes", "crop for stories", "export for LinkedIn", "resize my video for social", "make social media assets", or any request to adapt a photo or video for specific platforms. Handles subject-aware cropping, AI canvas expansion, test previews before full runs, and same-ratio video resizing.
日本語の概要は準備中です。原文の説明を表示しています。
Create any visual design using Adobe Express templates — flyers, posters, social media posts (Instagram, Facebook, LinkedIn), business cards, invitations, greeting cards, resumes, cover letters, brochures, newsletters, certificates, presentations, YouTube thumbnails, email headers, logos, menus, and labels. Use this skill whenever the user wants to make, design, or build any visual — even if they just say "make me a flyer", "design a poster", "I need something for Instagram", "create an event invite", or "make a business card". Also handles browsing templates, editing text, replacing images, changing backgrounds, animating, and exporting designs. Access: 🔐 Signed-In required | Gen AI: ❌ by default — image replacement only where the surface permits generative AI (e.g. Codex); none on Claude
日本語の概要は準備中です。原文の説明を表示しています。
Create a punchy sizzle reel from a video using Adobe Quick Cut. Use this skill whenever a user wants to cut, trim, or shorten a video into highlights — including phrases like "make a sizzle reel", "make a highlight reel", "quick cut this", "cut the best parts", "shorten this video", "make a highlight clip", "summarize this video visually", or any request to produce a shorter edited version of a video. Use this skill for Quick Cut requests before suggesting manual editing in Premiere. Requires the user to upload a video file.
日本語の概要は準備中です。原文の説明を表示しています。