無料GitHub で公開

tpmi-phewas-skill

Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise TPMI association results for one variant

openai/plugins

インストール方法を見る

含まれるファイル（4）

SKILL.md2.3 KB
agents/openai.yaml95 B
scripts/tpmi_phewas.py7.4 KB
scripts/variant_resolution.py11.9 KB

SKILL.md（原文）

インストールする前に、エージェントに与えられる指示の中身を確認できます。

Operating rules

Use scripts/tpmi_phewas.py for all TPMI PheWAS lookups.
Accept exactly one of rsid, grch37, grch38, or variant; resolve to the canonical GRCh38 chr:pos-ref-alt query before calling TPMI.
The script accepts max_results; start with max_results=10 and only increase it if the first slice is insufficient.
Re-run the lookup in long conversations instead of relying on older tool output.
Treat displayed ... in tool previews as UI truncation, not literal request content.
If the user needs the full association payload, set save_raw=true and report raw_output_path instead of pasting large arrays into chat.

Execution behavior

Return concise markdown summaries from the script JSON by default.
Return the JSON verbatim only if the user explicitly asks for machine-readable output.
Surface the canonical queried variant, total association count, and whether the results were truncated.
Increase max_results gradually instead of asking for large association dumps in one call.

Input

Read one JSON object from stdin, or a single JSON string containing the variant.
Required input: exactly one of rsid, grch37, grch38, or variant
Optional fields: max_results, save_raw, raw_output_path, timeout_sec
Common patterns:
- {"grch38":"6:160540105-T-C","max_results":10}
- {"grch37":"6:162447146-T-C","max_results":10}
- {"rsid":"rs9273363","max_results":10}
- {"variant":"6:160540105:T:C","max_results":25,"save_raw":true}

Output

Success returns ok, source, input, query_variant, max_results_applied, association_count, association_count_total, truncated, associations, variant, variant_url, raw_output_path, and warnings.
Use raw_output_path when save_raw=true.
Failure returns ok=false with error.code and error.message.

Execution

echo '{"grch38":"6:160540105-T-C","max_results":10}' | python scripts/tpmi_phewas.py

References

No additional runtime references are required; keep the import package limited to this file and scripts/tpmi_phewas.py.

レビュー

まだレビューはありません。使ってみた感想をお寄せください。

ログインしてレビューを書く

同じリポジトリのスキル

概要と使いどころ

accessibility-and-inclusive-visualization

無料

Make data visualizations accessible and inclusive. Use when the user needs chart or diagram accessibility guidance, text alternatives for complex visuals, color and contrast review, keyboard support, reduced-motion behavior for animation or parallax, or an accessibility QA workflow for exported figures, UML-like diagrams, and dashboards.

日本語の概要は準備中です。原文の説明を表示しています。