AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
Create isolated git worktrees with smart directory selection and safety verification
インストール方法を見るインストールする前に、エージェントに与えられる指示の中身を確認できます。
Git worktrees create isolated workspaces sharing the same repository, allowing work on multiple branches simultaneously without switching.
Core principle: Systematic directory selection + safety verification = reliable isolation.
Announce at start: "I'm using the Using Git Worktrees skill to set up an isolated workspace."
Follow this priority order:
# Check in priority order
ls -d .worktrees 2>/dev/null # Preferred (hidden)
ls -d worktrees 2>/dev/null # Alternative
If found: Use that directory. If both exist, .worktrees wins.
grep -i "worktree.*director" CLAUDE.md 2>/dev/null
If preference specified: Use it without asking.
If no directory exists and no CLAUDE.md preference:
No worktree directory found. Where should I create worktrees?
1. .worktrees/ (project-local, hidden)
2. ~/.config/superpowers/worktrees/<project-name>/ (global location)
Which would you prefer?
MUST verify .gitignore before creating worktree:
# Check if directory pattern in .gitignore
grep -q "^\.worktrees/$" .gitignore || grep -q "^worktrees/$" .gitignore
If NOT in .gitignore:
Per Jesse's rule "Fix broken things immediately":
Why critical: Prevents accidentally committing worktree contents to repository.
No .gitignore verification needed - outside project entirely.
project=$(basename "$(git rev-parse --show-toplevel)")
# Determine full path
case $LOCATION in
.worktrees|worktrees)
path="$LOCATION/$BRANCH_NAME"
;;
~/.config/superpowers/worktrees/*)
path="~/.config/superpowers/worktrees/$project/$BRANCH_NAME"
;;
esac
# Create worktree with new branch
git worktree add "$path" -b "$BRANCH_NAME"
cd "$path"
Auto-detect and run appropriate setup:
# Node.js
if [ -f package.json ]; then npm install; fi
# Rust
if [ -f Cargo.toml ]; then cargo build; fi
# Python
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
if [ -f pyproject.toml ]; then poetry install; fi
# Go
if [ -f go.mod ]; then go mod download; fi
Run tests to ensure worktree starts clean:
# Examples - use project-appropriate command
npm test
cargo test
pytest
go test ./...
If tests fail: Report failures, ask whether to proceed or investigate.
If tests pass: Report ready.
Worktree ready at <full-path>
Tests passing (<N> tests, 0 failures)
Ready to implement <feature-name>
| Situation | Action |
|---|---|
.worktrees/ exists | Use it (verify .gitignore) |
worktrees/ exists | Use it (verify .gitignore) |
| Both exist | Use .worktrees/ |
| Neither exists | Check CLAUDE.md → Ask user |
| Directory not in .gitignore | Add it immediately + commit |
| Tests fail during baseline | Report failures + ask |
| No package.json/Cargo.toml | Skip dependency install |
Skipping .gitignore verification
Assuming directory location
Proceeding with failing tests
Hardcoding setup commands
You: I'm using the Using Git Worktrees skill to set up an isolated workspace.
[Check .worktrees/ - exists]
[Verify .gitignore - contains .worktrees/]
[Create worktree: git worktree add .worktrees/auth -b feature/auth]
[Run npm install]
[Run npm test - 47 passing]
Worktree ready at /Users/jesse/myproject/.worktrees/auth
Tests passing (47 tests, 0 failures)
Ready to implement auth feature
Never:
Always:
Called by:
Pairs with:
This skill is written to stay usable across GitHub Copilot, Claude Code, and Codex.
$CODEX_HOME/skills/using-git-worktrees and restart Codex after major changes.Preferred MCP Server: None required
using-git-worktrees outside its documented task boundary.Before claiming the using-git-worktrees workflow succeeded:
まだレビューはありません。使ってみた感想をお寄せください。
概要と使いどころ
AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
日本語の概要は準備中です。原文の説明を表示しています。
Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and
日本語の概要は準備中です。原文の説明を表示しています。
12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, audit my rebuttal, check my response draft, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見, 評估回覆, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견 반영, 답변서 점검, AI 사용 고지.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready manuscript, or (5) systematically execute a planned paper. Triggered by phrases like 'write the paper from this outline,' 'compose the full manuscript,' 'execute the outline,' or when users have completed strategic planning (academic-paper-strategist skill) and are ready to write. Takes optimized outline as input; outputs complete manuscript with iterative quality checks.
日本語の概要は準備中です。原文の説明を表示しています。
Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy, 審查論文, 論文審查, 模擬審查, 同儕審查, 幫我審這篇, 以審查人角度評估, 審查者校準, 논문 심사, 동료 심사, 모의 심사, 심사자 관점에서 평가, 심사자 보정.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4) prepare for preprint submission, or (5) understand platform requirements and writing standards. Triggered by phrases like 'plan a paper on,' 'help me design a paper about,' 'identify research gaps in,' 'is this idea original,' or when users need structured research planning. The skill guides through three phases: Platform Analysis (identifying target venue and studying sample papers), Theoretical Framework (AI-driven literature search and gap identification), and Outline Optimization (structured design with reviewer-perspective self-assessment). Each phase includes quality evaluation standards and validation checkpoints.
日本語の概要は準備中です。原文の説明を表示しています。